The symptom signaling theory of ME/CFS involving neurons and their synapses

ME/CFS Science Blog

Senior Member (Voting Rights)
I wanted to make a thread to discuss the theory that ME/CFS is a signaling problem, located in the synapses of neurons in the brain. I think it fits and would help explain the few findings and observations that we have about the illness.

The clinical picture
First of all, there is no clear pathology in ME/CFS. No signs of inflammation (CPR and cytokines show no differences), no traces of ongoing infection, no deformities or neural damage, no notable increases in antibodies, no mitochondrial dysfunction, no organ damage, etc. I think this is the first important characteristic about the illness: not what we see, but what we don’t see.

The second point is that the disability and symptoms in ME/CFS are often greater than those in other chronic diseases, where there is clear pathology. Studies have compared ME/CFS patients to those with multiple sclerosis, rheumatoid arthritis, congestive heart failure, and renal disease and found that ME/CFS patients generally report more disability and impairment. Even terminal cancer patients can do much more than ME/CFS patients.

So, this poses a conundrum. Perhaps there is some pathology that we cannot yet detect: a hidden reservoir for the virus, antibodies that we don’t see, etc. The question, however, is: why would this ‘hidden’ pathology cause much more disabling symptoms than diseases where the pathology is all over the place? Why would it result in greater disability than in cases where we know there are tumors, inflammation, antibody responses, organ failure, etc? To me, the most plausible explanation is that ME/CFS pathology is in the signaling of symptoms itself.

Evolutionary, one can see symptoms as a response of the body to pathology. The organism retracts and avoids energy expenditure so that its focus can be on healing the disease. I think this explains why fatigue and malaise are part of almost all chronic illnesses. It’s simplistic, I know, but let’s call this the ‘symptom signal’. The hypothesis I’m exploring is that ME/CFS is mainly a pathology of this signal.

New illnesses are often studied by focusing on their most extreme manifestations, and only later is it found that milder and more subtle cases (forme frustre) exist. Let’s apply this and focus on (very) severe ME/CFS for a moment. These patients are so disabled by symptoms that they look like locked-in syndrome patients. They are bedbound, almost totally isolated from the outside world, and can hardly communicate or move. Yet from what we hear and the limited data that we get, there are still no clear signs of pathology. Blood work is largely normal. If we assume a different pathology, like a virus, an antibody, or blood flow problems, then in its severe form, this would, in some cases get out of control, show itself or cause tissue damage. If blood cloths, for example, are part of the pathology, we would perhaps expect to see more thrombosis. Blood flow problems would mean we are more likely to have brain or organ damage, etc. For most pathologies, this would again be a challenge to explain: the symptom/disability keeps increasing to a maximum while biological dysregulation remains elusive. For the signal theory, this is what we would expect with increasing severity: the volume knob for symptoms has been turned to 11, but the rest of the body seems relatively fine and functioning.

Let’s move on to symptoms. I’ll discuss PEM in the next section. The other characteristic ME/CFS symptoms, such as fatigue, malaise, pain, unrefreshing sleep, cognitive dysfunction, light and sound sensitivity, all clearly point to a neurological problem. But it’s not the kind of neurological problem that suggests brain damage. This forum is a good example that there is no retardation in ME/CFS, and specific memory loss has not been picked up in various cognitive tests. The main cognitive problems are brain fog, difficulty concentrating, slower reaction times, etc. Similarly, the sleep problem that is most reported is waking up unrefreshed. So, I would say these fit the ‘symptom signaling’ theory well and do no suggest other problems that require further explanation.

Orthostatic intolerance (needing to lie down, not POT or hypotension) and gut problems (not tolerating certain foods, poorer digestion) could also be viewed/explained from a neurological angle. So, the theory not only fits the most characteristic ME/CFS symptoms well but might also better account for the broad range of symptoms reported. Other theories have more difficulty with this. If you start with endothelial dysfunction or connective tissue, you have to make a lot more connections to come out to photophobia. I think that’s why so many documents say that ME/CFS is a complex multisystem disease. Theories often need to assume multiple pathologies in different body systems and complex connections between them to account for the many symptoms seen. I think this can be more easily explained by ME/CFS being a neurological problem of symptom perception.

Next: post-exertional malaise (PEM). A key observation is that patients can exceed their limit but then get payback and deterioration in symptoms afterwards. This means there is no hard physiological limit that stops patients, like in muscle or mitochondrial pathologies. ME/CFS patients don’t fall during CPET because their muscles stop working or they don’t quit because they can’t breathe enough. They are usually able to finish the test relatively ok but get much more ill afterwards. What stops them is the severity of symptoms, not a biological dysregulation. The mechanisms seem central (in the brain) rather than peripheral (in the muscle). Various studies have tested patients during PEM (e.g., after an exercise test), but overall, these show no clearer signs of pathology than before it. There is e.g., no clear buildup of lactate or detectable immune response during PEM. So, this is another tricky phenomenon to fit into a theory. Why would exertion make things worse?

In the symptom signaling theory, it would make sense. The main problem is that neurons get info that something is horribly wrong in the body, so the organisms must be told to rest and retract. If we do activities, these might give a different signal telling the nervous system that the organism isn’t listening. There might be signs of high energy expenditure that it cannot afford at this time, such as muscle breakdown or a stress response. When the neurons get this info, they interpret this as the body being naughty so the volume of the symptom signal is increased to induce the appropriate response (feeling awful and not doing anything anymore). The delay in PEM would then be explained by the various signals coming through, communicating, and finding the right response.
 
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Genetic data
Let’s now move on to some actual data. The best evidence that we have is from genetic studies because of large sample sizes that control for population differences and that are not confounded by other factors such as diet, behavior, or the illness itself.

If we look at all the differences found in DecodeME (not just the 8 hits), check which genes they affect and where these are expressed, then the answer is the brain. The results of the MAGMA analysis are shown below.
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Forestglip (@forestglip ) has done a preliminary analysis that looks at more specific cell types and here neurons came out on top. A gene set analysis pointed to the synaptic membrane.

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If we look at the hits that reach statistical significance, the closest genes often point to the same location.

The best example is perhaps the hit on chromosome 17 where the gene CA10 is the only candidate, and it is clearly linked to neurons and synapses.
CA10
This gene encodes a protein that belongs to the carbonic anhydrase family of zinc metalloenzymes, which catalyze the reversible hydration of carbon dioxide in various biological processes. The protein encoded by this gene is an acatalytic member of the alpha-carbonic anhydrase subgroup, and it is thought to play a role in the central nervous system, especially in brain development. Multiple transcript variants encoding the same protein have been found for this gene.

UNC13C seems the closest to the hits on chromosome 15. It’s gene card reads:
Predicted to enable calmodulin binding activity and syntaxin-1 binding activity. Predicted to be involved in glutamatergic synaptic transmission and regulated exocytosis. Predicted to be located in presynaptic active zone. Predicted to be active in several cellular components, including axon terminus; presynaptic membrane; and synaptic vesicle membrane.

POU3F2 is the closest gene to the hit on chromosome 6q
This gene encodes a member of the POU-III class of neural transcription factors. The encoded protein is involved in neuronal differentiation and enhances the activation of corticotropin-releasing hormone regulated genes. Overexpression of this protein is associated with an increase in the proliferation of melanoma cells.

PEBP1 seems like the second closest to the hit on chromosome 12, next to TAOK3, which seems very stretched out.
This gene encodes a member of the phosphatidylethanolamine-binding family of proteins and has been shown to modulate multiple signaling pathways, including the MAP kinase (MAPK), NF-kappa B, and glycogen synthase kinase-3 (GSK-3) signaling pathways. The encoded protein can be further processed to form a smaller cleavage product, hippocampal cholinergic neurostimulating peptide (HCNP), which may be involved in neural development. This gene has been implicated in numerous human cancers and may act as a metastasis suppressor gene. Multiple pseudogenes of this gene have been identified in the genome.

For the hits on chromosomes 1 and 20, there are so many potential genes in the location that it's harder to guess which one might be relevant. The most plausible hits on chromosome 13 (OLFM4) and chromosome 6p (butyrophilin3 and -2 homologues (BTN2A2, etc.) point to the immune system.

I don’t think this can be a coincidence. The DecodeME study focuses a lot on colocalization and gene expression to find causal genes, but there are some caveats with this approach, as explained here. I put more focus on the gene that is closest to the SNP hit, as previous research found this is more likely to be a causal gene than those that are further away.

Neurons and their synapses were also highlighted by the Zhang et al. preprint by the group of Michael Synder. They took a different approach, focusing on rare variants that are likely to lead to a loss of function using data on protein interactions and a neural network. They reported: “As highlighted in our network analysis, ME/CFS genes participate in biological pathways associated with synaptic function.” This was not expected, and they were the first to report this. They found several synapse-related genes, such as SYNGAP1 or genes like NLGN1, GRM157, DLGAP1 that code for proteins that regulate synaptic function.
 
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Conclusion
Overall, I think this is convincing evidence that should make this the most plausible framework for understanding ME/CFS. When I think about other theories for ME/CFS, they often fit into this concept as an addition (for example, by giving a plausible explanation of how the signaling error existed) rather than competing with it. Otherwise, there are too many issues that do not fit well. They come back to the same place but have the additional problem of having to explain why synapses show up as the first hits of GWAS.

Of course there are other things that we know about ME/CFS. There’s strong evidence that it mostly affects women (ca.75-80%), that it is neither common nor rare (prevalence between 0.1 and 1%) and that it can be triggered by various infections. The latter was also supported by DecodeME hits (OLFM4 is a biomarker for the severity of infectious diseases).

So, ME/CFS looks like an immune-triggered brain disease, mostly located at the synapses of neurons where it creates a continuous and severe symptom-signal that disables patients without clear signs of other pathology or biological disruptions.

Any objections?

PS: I realize that most of these thoughts are not very original and based on or inspired by the many valuable comments from Jo and others on other threads.
 
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ME/CFS patients don’t fall during CPET because their muscles stop working or they don’t quit because they can’t breathe enough. They are usually able to finish the test relatively ok but get much more ill afterwards. What stops them is the severity of symptoms, not a biological dysregulation.

I would disagree with this on some counts. I was able to complete a CPET whilst moderate but my muscles were burning that much and becoming so weak and I was gasping for air, tachycardic and didn’t get the blood pressure rise to compensate with the exercise as would a healthy person. And obviously severe patients wouldn’t even make it to a CPET.

How can the neuronal signalling problems explain the objective evidence from David Systrom’s invasive CPET work around reducing filling pressures of the heart and oxygen extraction problems during exercise? I can understand the neuronal signalling problems whether central/peripheral or both can explain the muscle fatiguability process. But can a purely central neuronal signalling process alone cause such autonomic effects without there being a neuropathic process at play?
 
Interesting! I think formulating things like this is very valuable exercise to help move forwards. I agree with the general premise this is one of the “easiest”, or highest explanatory power potential metamechanism for ME/CFS.

But it’s still very unclear how this would work practically.

Immune trigger? How exactly does that create this persistent brain state?

Brain state worsening with overexetion? Does this imply immune response to exertion affecting the brain?

What about symptoms like sore throats, which are objectively measurable (why haven’t we had studies looking into this in ME yet?). Can the brain trigger them?

I feel like what you’ve proposed is one side of a story that needs another similarly developed, probably immune, side. (Which would also probably offer more potential places to fit in the female bias).
 
Another question, is do we have examples of illness where we know somatic symptoms are created or amplified by the brain in a similar way as proposed here.

Central Sensitisation and FND come to mind, maybe even Wallitt’s effort preference for the loss of function, which are poorly evidenced theories that border on unfalsifiable dogma.
 
Any objections?

No. I think this is well argued.

And I agree that, in a way, the other theories that look a bit plausible can largely be seen as modular add ons to this central mechanism.
How can the neuronal signalling problems explain the objective evidence from David Systrom’s invasive CPET work around reducing filling pressures of the heart and oxygen extraction problems during exercise?

The problem for me with Systrom's work is that we rarely get clear cut controlled studies with blinded reading as far as I remember. That aside, I think reduced filling pressures could easily be secondary to postural shifts in ME/CFS people. If oxygen extraction was a clinically significant problem then we ought to have seen much reduced performance on Day 1 CPET from other groups? And ME/CFS Science Blog's argument that we never see a level of severity of that to produce overt pathology is another worry.

I think the proposed model, without structural pathology in CNS, is as, if not more, likely to produce potent autonomic effects as one with.
 
Another question, is do we have examples of illness where we know somatic symptoms are created or amplified by the brain.
Would you count sickness response during infections as an illness? As far as I know, that's largely thought to be symptoms produced by the brain. There are some similarities with the symptoms of ME/CFS, so it might be worth looking into the biology of the sickness response.

For example, first result on PubMed for "sickness response":

Brainstem ADCYAP1+ neurons control multiple aspects of sickness behaviour, 2022
Infections induce a set of pleiotropic responses in animals, including anorexia, adipsia, lethargy and changes in temperature, collectively termed sickness behaviours1. Although these responses have been shown to be adaptive, the underlying neural mechanisms have not been elucidated2-4.

Here we use of a set of unbiased methodologies to show that a specific subpopulation of neurons in the brainstem can control the diverse responses to a bacterial endotoxin (lipopolysaccharide (LPS)) that potently induces sickness behaviour.

Whole-brain activity mapping revealed that subsets of neurons in the nucleus of the solitary tract (NTS) and the area postrema (AP) acutely express FOS after LPS treatment, and we found that subsequent reactivation of these specific neurons in FOS2A-iCreERT2 (also known as TRAP2) mice replicates the behavioural and thermal component of sickness.

In addition, inhibition of LPS-activated neurons diminished all of the behavioural responses to LPS. Single-nucleus RNA sequencing of the NTS-AP was used to identify LPS-activated neural populations, and we found that activation of ADCYAP1+ neurons in the NTS-AP fully recapitulates the responses elicited by LPS. Furthermore, inhibition of these neurons significantly diminished the anorexia, adipsia and locomotor cessation seen after LPS injection.

Together these studies map the pleiotropic effects of LPS to a neural population that is both necessary and sufficient for canonical elements of the sickness response, thus establishing a critical link between the brain and the response to infection.
 
Would you count sickness response during infections as an illness? As far as I know, that's largely thought to be symptoms produced by the brain. There are some similarities with the symptoms of ME/CFS, so it might be worth looking into the biology of the sickness response.

For example, first result on PubMed for "sickness response":

Brainstem ADCYAP1+ neurons control multiple aspects of sickness behaviour, 2022
Yes. Perhaps I should have been more clear, that I meant without something triggering it inside the body. Ie. here, infections primarily.

Interesting to bring up sickness reponse here, because I think that’s been one of the more common ME/CFS theories for quite a while. That the brain is stuck in some persistent sickness response loop. I wonder how that differs or relates to what @ME/CFS Science has proposed.
 
Another question, is do we have examples of illness where we know somatic symptoms are created or amplified by the brain.

Feeling ill is always ultimately created by the brain. Where we know mechanisms they involve chemical and neural inputs into hindbrain.

Central Sensitisation and FND come to mind, which are both poorly evidenced theories that border on unfalsifiable dogma.

To me both central sensitisation and functional neurological disease are in one sense just descriptions of what we observe and in another sense elaborated into absurd theories. In the former sense they are unfalsifiable simply because we can already see they must apply. The elaborations are, on the other hand, falsifiable and in many cases have been shown not to apply.
 
I think this can be more easily explained by ME/CFS being a neurological problem of symptom perception.
It is not clear to me what you mean by «symptom perception». My understanding is that symptoms means the subjective perception of something not being right. So «symptom perception» would mean that there is something wrong with the subjective perception of the subjective perception of something not being right.

I also wonder who the perceiver(s) is/are.

It might be that you mean that ME/CFS is the presence of a specific patter of central symptoms in the absence of obvious peripheral or central damage, with synaptic functioning at its core?
 
Yes. Perhaps I should have been more clear, that I meant without something triggering it inside the body. Ie. here, infections primariky.

People with brain lesions can complain of pain, nausea, fatigue, loss of vision, flashing lights and all sorts of things without there being any stimulus outside the brain. These are not 'psychosomatic' situations. The symptoms arise from more or less well understood pathway lesions, for instane in thalamus or cortex.
 
People with brain lesions can complain of pain, nausea, fatigue, loss of vision, flashing lights and all sorts of things without there being any stimulus outside the brain. These are not 'psychosomatic' situations. The symptoms arise from more or less well understood pathway lesions, for instane in thalamus or cortex.
Interesting. But we don’t see lesions in ME/CfS. And I assume that isn’t what ME/CFS Science is proposing.

Oo maybe phantom pain after amputations is something to look at.
 
Interesting. But we don’t see lesions in ME/CfS. And I assume that isn’t what ME/CFS Science is proposing.

You don't see lesions when the brain creates the unbearable symptoms of heroin withdrawal. Everything looks quite normal and there is not only no external cause but the symtpoms arise from the absence of an external agent. The autonomic effects can be spectacular, with sweating and changes in blood pressure.
 
You don't see lesions when the brain creates the unbearable symptoms of heroin withdrawal. Everything looks quite normal and there is not only no external cause but the symtpoms arise from the absence of an external agent. The autonomic effects can be spectacular, with sweating and changes in blood pressure.
Interesting. I like where this is going. If I had the energy I’d be trying to learn more about this stuff.

Edit: But in this case the symptoms are probably caused by physiological adaptations of the brain to the substance right? And so the lack of substance can be seen as an internal change triggering the symptoms.
 
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If we assume that the problem lies with the signalling between synapses - can we characterise the types of issues that might occur with regards to the flow of information between neurons?

My rudimentary understanding of synapses is that they are the connections between neurons. Google tells me that synapses can be both uni- and bidirectional.

My immediate thoughts are that we have three categories:
  1. The nature of a signal is altered (stronger, weaker, otherwise different).
  2. The signal is completely disrupted and doesn’t reach the other synapse.
  3. A signal is created without the regular trigger from the neuron.
Maybe it’s a stupid question, but is it conceivable that external cells (e.g. immune cells) can trigger a signal in the receiver synapse without there being a signal from the sender synapse?
 
This is all very well thought out. And the neuron/synapse story fits very well with the symptoms I have experienced traditional models of ME do not easily explain. Tremors, fasculations, feelings of unquantifiable pain/sensitivity, freezing up etc...


Some questions:

Could the feedback loop be entirely brain stimulated with no further immune system stimulation post trigger? Do we think this is likely?

Could the process be the reverse of what we have commonly suggested i.e. the above neurological process triggering interferon release and what have you and making us feel dreadful?

Leaving aside the question of immune system signalling, if we look at purely your model, how do we test for this? What experiments could we do? How do we treat it, if we could?



My money is still on there being an immune signal regulating all of this but I am just a layman making bets on the sidelines.
 
Great work, thank you!

On first read, the only thing I take slight issue with is the 'no hard limit'.

It depends how you read it though. In one sense there is a hard limit in that people's muscles stop working and they begin to black out—it's not true that people don't fall or collapse—but it's different to the 'hard limit' in healthy people when they exercise to exhaustion.

In ME/CFS we see near-blackouts and muscles that tend to go flaccid, but overexercised people are more likely to get nausea, vomiting and muscles that tend to go rigid. People with ME/CFS don't get anywhere near that stage, presumably because defective signalling means they're not allowed to get anywhere near it.
 
I don't understand how this threory explains delayed PEM. Also, you say pwME don't experience being unable to continue and activity, just a rise in symptoms. That's not my experience, even when mild I couldn't do vigorous physical activity such as running, my legs would give way. And how does it explain pain increase and growing weakness while using muscles, physical and cognitive fatigability?
 
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