I think the ME/CFS population is heterogeneous and other GWAS studies, of conditions like high blood pressure i.e. with a clear/er diagnosis, have required 50K people, but then I have very limited knowledge too!
I was talking earlier to someone and motioned my disappointment, re the fact that Sajid Javid was leaving parliament, --- e.g. opportunity to get £5 million to do 5000 ish whole genome sequences - to look for rare variants - another potential route into understanding ME/CFS.
Keep in mind that DecodeME are working with a data analysis group - aim is to look for clusters/sub-groups - so that might help re heterogeneity.