The possibility of autoimmunity or auto-reactivity in ME/CFS

Also on a side note, every time I see a miracle recovery or remission story I will deep dive into the paper trail, eg check comment history, background, internet check.

I have come to the conclusion most of these stories the people actually have ME, or are promoting something.
 
You don't need to dive into anecdotes though. Rituximab and their (FM) testing actimeters on MECFS patients already show a pretty decent chance of significant random fluctuations.

For some reason a common misconception, that getting better is simply borderline impossible after a few years has spread like wildfire in our community, and the idea simply won't die. Looking at every study FM have done and it's obvious that it simply isn't true. And there's no reason to believe the improvers didn't have real MECfS or whatever.
 
I’m not sure anyone knows what “normal” levels of autoabs are yet. Everyone has autoabs. I think we don’t know very well which harm and which are benign yet. The theory is pathogenic ones of to be determined identity cause ME/CFS exist at baseline in responder and would get depleted / go away by plasma cell depletion. A lot of this is still speculative and it’s not my trial - I study autoabs a lot more than ME/CFS
I still don’t follow.

If someone with a disease have similar levels of autoabs compared to people without that disease (i.e. normal), then there is no evidence for the autoabs causing the disease by themselves.

Jonathan outlined various ways normal levels of abs (including autoabs) might be involved in a disease be being mediators of signals to or from other systems that don’t behave normally, but that’s not autoimmunity in the traditional sense.
I think because of the correlation with improvement. which provides a bit more evidence that it's the antibody depleting mechanism of dara that is relevant to improvement. Before, we knew that the more NK cells someone had, the more they improved, but we couldn't be sure that the people with more NK cells were actually able to kill more plasma cells.
Thank you, that explanation helps.
 
If only we had the non quantitative data on these guys, like did they go back to work, normal life, etc, we would know a lot more.

Numbers have a place, but this data would tell us a lot more.

Even a short essay write up of pre and post of each patient. But I know studies don’t do these things.

If they just got the participants to write up a quick one on their treatment, we would learn many useful things.
 
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I think this is a cogent point. When I saw the claim that improvement after rituximab correlated with a fall in anti-GPCR antibodies I was unimpressed by that as evidence for anti-GCPR being important. We can see they aren't from the initial levels in patients and controls.

But, as for the NK cell number data, it does lend some support to the idea that antibodies are contributing to mediation of symptoms. In other words that F&M are on the right track in broad terms. That is not trivial, even if it is another piece of soft data.

But one possibility here is that antibodies in general, or perhaps certain subtypes, are one of the things that can feed signals in to hyper-responsive neuro-immune pathways and that ME/CFS is the hyper-responsiveness, not the antibodies. Maybe normal spectra of antibodies contribute to making people with the neuroimmune signalling problem, just as light and touch do. In a way that is what we proposed in the Qeios paper.

One possibility is that over time we accumulate an increasing number of 'dirty' antibody species in our long lived plasma cell compartment and that a dose of Daratumumab is like a spring clean. It does nothing to the ME/CFS state per se but makes life easier for the person with ME/CFS. The received wisdom has been that antibodies only do harm if they are directed against specific self antigens. But a wide spectrum of apparent autoantibodies does not fit with generating one type of illness. Each autoantibody we know of that goes with a disease has a separate clinical syndrome. What I think people forget is that antibodies bind to other things - like Fc receptors - and can interact with molecular shapes that are not strictly either self or foreign. Anti-citrullinated protein antibodies are a good example. The antibody recognises a degradation of lots of proteins.

Modern lab science focuses a lot on what you can measure and generate vast banks of data but almost of all of those data tell us nothing useful. Having seen knowledge of autoantibodies develop from the findings of my departmental mentors, like Doniach and Roitt, to the highly detailed findings on variious anti-synthetase antibodies in myositis and spent hours pouring over pharmacodynamic profiles of VH gene usage in rheumatoid patients I am sceptical that broad profiles of ubiquitous low level autoantibodies will tell us much.
This is a really exceptional breakdown of the situation - thank you Jonathan Edwards and sorry if we got off on the wrong foot.

Let's talk this specifically as this is a very productive direction: "One possibility is that over time we accumulate an increasing number of 'dirty' antibody species in our long lived plasma cell compartment and that a dose of Daratumumab is like a spring clean"

I think there is a decent chance the 'spring clean' helped in the Fluge/Mella trial. So far - the data points to 'the amount of spring cleaning that happened' as correlating to improvement more than other things like total IgG change or NK at baseline. Just off a meeting with them and have a full set of figures prepare for a paper that should go out later this summer.

If we start from the assumption that their trial worked and is not an artifact (TBD with their expanded randomized trial) - I think the 'spring cleaning' is a decent hypothesis for why it worked.

Why did spring cleaning help? Is there a single culprit or small family of 'ME/CFS symptom creating autoantibody' that is more likely to have been 'removed' in the patients with wider spring cleaning? Or existed only in responders at baseline and was there to be removed in them as a subgroup? This is my favorite hypothesis. We have an enrichment direction for such a pathway in the data - but it is a discussion point not proof. An antibody sticking to something does not prove mechanism; deep functional studies are needed on potential culprits and this rarely happens other than with some of the best funded groups.

It is also possible that the specific antigens don't matter as much, that autoabs get in the way in general, and that spring cleaning 'just helps' as it reduces total autoantibody events - plausible, and I think the direction you were going - but these 'background' autoantibody signatures are so pervasive I tend to think 'literal mechanisms' occur more often, and matter more, than most currently assume. Also - not all of these events are 'low titer / weak' - their titer is often undetermined - but that doesn't say that it is weak. I do know in some cases where I've chased outliers in titered minichips some preserve in the same HuProt microarray assay above background at 1:10,000,000+ dilution - but I don't actually know the frequency of a standard repertoire that preserves to this level and may go run some so that I know....!

A third theory is that maybe the spring clean frees up 'useful space' in the repertoire - or directly removes aberrant actions it was doing - maybe something like a latent virus infection was getting out of hand via being tolerized in the IgG4 sub compartment - maybe the 'spring clean' allows restoration of immunity to some pathogen that causing havoc and creating symptoms (apologies if we clearly know viruses are not linked - I know far less of the literature here than you).

A bit more on why I think we might find a 'culprit' autoantigen that goes away is that such things are far more frequent than you might expect and would not be surprised if ME/CFS had specific findable pathogenic autoantibodies (perhaps triggering "hyper-responsive neuro-immune pathways" directly)!

There is emerging literature that 'background' autoantibodies have profound effect. 4% of people over 70 have Type I IFN-blocking autoantibodies:

I know from conversations that this is reproducing 'at scale' across tens of thousands of samples ( I see this event in my own data too regularly) - some portion of the 'healthy' population has vitamin B12-import blocking autoantibodies:
 
@Tyler Hulett If I’m understanding correctly, it sounds like certain (types of?) antibodies were depleted in the apparent responders. If these antibodies are not noticeably higher in ME/CFS than they are in healthy people, is it possible they’re just similar to an actual problematic antibody that is not getting measured that’s also getting depleted? In other words, some antibody we’re unaware of and have never measured is high in ME/CFS and getting depleted by dara alongside some similar non-problematic ones that we’re able to detect. Is this a possible explanation for no one having ever found a consistently high antibody in ME/CFS but improvement correlating with reductions in certain antibodies?

I hope this question makes sense… sorry, not a scientist!
 
@Tyler Hulett since there’s currently a bit of a problem with the sample sizes given the small number of, say for the moment postulated drug responders, and large numbers of antibodies as well as possible analyses and outcome measures, I do wonder if you could filter some things out by incorporating previous knowledge, for example antibodies that fall with Rituximab or immunadsorption presumably should not play a central role (at least not by themselves). I realise that you have noted that the signature you see for Dara might be different to that seen for Rituximab but maybe re-running that experiment could be worth a shot as well (I’m not sure whether Fluge and Mella still have blood to re-run the experiment but there’s currently a different trial underway in Japan with Rituximab and blood samples from various immunadsorption studies should probably still be available).
 
We didn't have controls in this cohort so it is hard to tell. And yes could go to old studies but someone has to pay for it and it costs us to run the arrays.... We will likely confirm on the expanded trial when that's done but won't be for more than a year. The most 'likely' hypothesis in my opinion matches what you're saying Verity - that there is perhaps a common subtype of ME/CFS defined by autoantibodies that yes are distinct to them and don't occur in controls - and they go away with therapy in the responders but might also be there in the non-responders and not going away. However, it is exceptionally rare to find autoantibodies so distinct that they completely define a disease. Even lupus patients are not always positive to all the canonical lupus autoantigens. Does this mean lupus is multiple diseases? Or does it mean these autoantibodies are all downstream of some 'other' master mechanism (perhaps some other entirely missed autoantibody not-yet discovered that binds some antigen harder to mine for or that has been missed by being against a post-translational protein modification and harder to find)? We don't quite know yet as we don't fully understand what lupus is. ME/CFS is even less defined.

One of the cases I have encountered where 'everyone' with a disease has an autoantibody is in generalized lipodystrophy (autoimmunity to fat cells) - people with this all have autoantibodies to PLIN1 on our HuProt arrays and it may be a 'disease defining autoantibody.' Small study but striking and we've seen a few other cohorts matching this:

I have some outlier candidates that fit mechanistic directions in the ME/CFS data already ... but it's only 10 patients and we are screening vs 21,000 autoantibodies simultaneously - about 1300 are positive in at least one of the patients - that means our statistics are not very good even if they're in most responders because there are too many experiments vs the number of things tested and so randomness gets in the way. There are a few dozen autoantibody targets that 'disappear more often' in the responders as our shortlist that will be described in the paper.

To my knowledge nobody has found a consistently high antibody associated with ME/CFS. It is my understanding that historical searches for disease-defining autoantibodies are conflicting/negative historically according to Johnathan Edwards higher in the thread. My rebuttal is mostly that 'all autoantibody searches are by-definition incomplete.' I think doing a larger set on our arrays would help - but it still has major blind spots.

To find 'every possible' autoantibody is a bit like asking if it is possible to mine all the gold in California. Ie it is really really hard - perhaps impossible - to prove the negative that there is 'no way' an autoantibody is the issue. There are always places with diminishing returns left unchecked where the autoantibody answer might be. For example - a HuProt array has 80% of the human proteome based on SwissProt. That's not everything. Scientists do not yet entirely agree on what 'everything in the proteome is' and we are likely missing more of it than we think. We are also missing common human genetic polymorphisms. It lacks chemical or post-translational modifications of proteins that might occur biologically in ME/CFS patients. Perhaps the 'real' autoantibody is an oxidized protein (transformed with advanced glycation endproducts or something) and you miss it by only searching vs the native forms entirely.

Autoantibodies are a hard messy field. Thankfully, I believe an important one - and perhaps also important here.
 
To find 'every possible' autoantibody is a bit like asking if it is possible to mine all the gold in California. Ie it is really really hard - perhaps impossible - to prove the negative that there is 'no way' an autoantibody is the issue.
If it’s essentially impossible to test for all autoantibodies, then the hypothesis that «an as yet unknown autoantibody is causing this disease» is untestable. The logic goes both ways.
 
If it’s essentially impossible to test for all autoantibodies, then the hypothesis that «an as yet unknown autoantibody is causing this disease» is untestable. The logic goes both ways.
That’s exactly right. But we should endeavor to try and find the cause and cures for conditions like ME/CFS regardless of the difficulty or today’s technology limitations no? The tech is constantly getting better to do these things and search more completely too.

This same impossible to prove the negative thing is true for many other approaches. But it is also very logical to eliminate autoantibodies as the likely mechanism if *some other mechanism is found* - for example there are a great number of Mendelian genetic diseases where the gene is the parent mechanism. I’m just trying to say that until the cause is proven - it remains on the table as a possibility *even if it’s unusually difficult to find.* And just because we see negative data in our existing methods doesn’t mean this route isn’t central to the mechanism. The universe sadly does not owe us an easy to find explanation for ME/CFS …
 
@Tyler Hulett Thanks so much for the explanation! That’s really interesting. I hope you are onto something here. I’m really looking forward to seeing the data.

I figure whatever the cause is has been elusive for so long that we should not be surprised if it’s unusually well hidden or related to something we don’t know how to measure yet.
 
That’s exactly right. But we should endeavor to try and find the cause and cures for conditions like ME/CFS regardless of the difficulty or today’s technology limitations no?
I don’t think anyone would suggest otherwise.
And just because we see negative data in our existing methods doesn’t mean this route isn’t central to the mechanism. The universe sadly does not owe us an easy to find explanation for ME/CFS …
Nor does it owe us that the explanation can be found with tech X.

With an abundance of perfectly possible explanations we have to prioritise the hypotheses that can be tested now, because otherwise we’d just be sat around waiting for the tech to catch up. Creating untestable hypotheses doesn’t take us closer in time to being aware of the solution, even if a hypothesis is right, unless the hypotheses themselves drives the advancement of the tech. I consider it unlikely that a hypothesis for ME/CFS would by itself contribute to tech development anytime soon. What we’ve observed so far is new or old tools looking for places to be used, and ME/CFS being one of many possibilities.

I of course agree that we shouldn’t dismiss any hypotheses unless they are conclusively disproven (if that’s at all possible), and weakening other testable hypotheses could strengthen the case for the untestable ones, at least if you assume a finite amount of possible hypotheses.
 
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