Transcriptomic Profiling of Endothelial Progenitor Cells in Post-COVID-19 Patients: Insights at 3 and 6-Months Post-Infection, 2025, Poyatos et al.

Chandelier

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Paula Poyatos 1 2 , Miquel Gratacós 1 , Daniel Aguilar 3 , Neus Luque 1 , Marc Bonnin-Vilaplana 2 4 5 , Saioa Eizaguirre 2 4 , Marta Cascante 6 7 8 , Ramon Orriols 2 4 5 9 , Olga Tura-Ceide 1 2 3 4 9

Highlights​

  • Transcriptomic profiling reveals long-term endothelial dysfunction in post-COVID-19
  • Enrichment analyses highlight disrupted pathways of endothelial homeostasis
  • Minimal changes between 3 and 6 months suggest sustained endothelial damage
  • Post-COVID patients with PE display unique profiles with reduced thrombosis markers

SUMMARY​

Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has caused significant global morbidity since 2019.
Long-COVID, characterized by persistent symptoms after acute infection, may involve endothelial injury.

We analyzed endothelial colony-forming cells (ECFCs) from post-COVID-19 patients at 3- and 6-months post-infection, comparing them with healthy controls and stratifying by prior pulmonary embolism (PE).
Transcriptomic profiling identified differentially expressed genes (DEGs) associated with endothelial homeostasis, inflammation, oxidative stress, and thrombosis.
Post-COVID ECFCs showed downregulation of NOS3, KLF2, ANGPT1, PIK3R3, GBX2, GDF6, SMAD6, SRC, and TGFB1, and upregulation of CASP1, CXCL5, IL12A, SOD2, TIMP3, and TLR2.
Minimal differences were observed between 3 and 6-month samples. PE patients showed downregulation of thrombosis-related genes such as PTGS2 and ACKR3.

These findings indicate sustained endothelial dysfunction and inflammation up to 6 months post-infection, highlighting the importance of long-term monitoring and potential therapeutic strategies to support vascular health in post-COVID-19 patients.

Graphical abstract​

 

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This pattern isn’t unique to COVID.
We’ve seen similar endothelial reprogramming in other chronic conditions.
HIV suppresses KLF2 and eNOS, driving vascular inflammation.
CMV activates TLR2/IL-1β pathways, impairing vessel repair.
Aging downregulates KLF2, ANGPT1, NOS3 - activates CASP1 and SOD2.
COVID seems to combine all three -
a viral infection that leaves the endothelium older, inflamed, and unable to heal.
 
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