Whether SNPs were imputed in DecodeME is in the summary statistics files, where 1 means the SNP was actually measured,
Brilliant - I never would have found that.
For example, if ALL pathological ME variants are absent on the UKB Axiom array, how sure can we be that imputation against the general population will cause them to be associated with pwME?I wouldn't think it would cause issues for the reference panel to be healthy unlike the cases being imputed, but I'm not sure.