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Data-driven analysis to understand long COVID using electronic health records from the RECOVER initiative 2023 Zang et al

Discussion in 'Long Covid research' started by Andy, Apr 9, 2023.

  1. Andy

    Andy Committee Member

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    Abstract

    Recent studies have investigated post-acute sequelae of SARS-CoV-2 infection (PASC, or long COVID) using real-world patient data such as electronic health records (EHR). Prior studies have typically been conducted on patient cohorts with specific patient populations which makes their generalizability unclear. This study aims to characterize PASC using the EHR data warehouses from two large Patient-Centered Clinical Research Networks (PCORnet), INSIGHT and OneFlorida+, which include 11 million patients in New York City (NYC) area and 16.8 million patients in Florida respectively. With a high-throughput screening pipeline based on propensity score and inverse probability of treatment weighting, we identified a broad list of diagnoses and medications which exhibited significantly higher incidence risk for patients 30–180 days after the laboratory-confirmed SARS-CoV-2 infection compared to non-infected patients. We identified more PASC diagnoses in NYC than in Florida regarding our screening criteria, and conditions including dementia, hair loss, pressure ulcers, pulmonary fibrosis, dyspnea, pulmonary embolism, chest pain, abnormal heartbeat, malaise, and fatigue, were replicated across both cohorts. Our analyses highlight potentially heterogeneous risks of PASC in different populations.

    Open access, https://www.nature.com/articles/s41467-023-37653-z
     
    SNT Gatchaman, Wyva, Hutan and 2 others like this.
  2. rvallee

    rvallee Senior Member (Voting Rights)

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    Most long haulers still report complete stonewalling about getting any of their issues on record. Most physicians are refusing, still gaslighting most patients, likely on orders from their employers. So that's about as useful as this study is.

    I'll never understand the level of comfort the profession has with GIGO. Never wanting to address the GI, because it's fully assumed that mistakes are impossible. Or whatever. We are way beyond the point at which this can be said to be an oversight, it's so blatant and commonplace it has to be considered an accepted standard practice.
     
    bobbler, Wyva, Hutan and 5 others like this.
  3. Hutan

    Hutan Moderator Staff Member

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    Even with that important proviso, I thought this study was well done and made for very interesting reading.

    The differences between the two data sets, Florida and New York, are really remarkable. There was a lower incidence of PASC associated conditions in Florida and a much smaller range. The Florida data set had more disadvantaged people who will have had less access to care, and possibly less focussed care, on average. The Florida data set was also younger, and most infections happened later than in New York, so knowledge of appropriate treatment of Covid-19 was better.

    They analysed the large datasets a number of ways, including splitting the data out just for people with no co-morbidities prior to infection. Even in that healthy group, there were still patterns consistent with ME/CFS.

    It's notable that anxiety is not one of the more common post-covid conditions in the New York dataset, and there was actually less anxiety in the post-Covid Florida data set than in the uninfected controls. Depression, oddly, did not even get a mention in both datasets.
     
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  4. Hutan

    Hutan Moderator Staff Member

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    Here's just an example of the data presentation - the charts are very clear throughout, and well worth a look through. These excerpts are for Adjusted excess burden (numbers per 1000), just for the New York sample:

    Screen Shot 2023-04-12 at 6.43.46 am.png

    Screen Shot 2023-04-12 at 6.44.23 am.png

    This is a massive sample, so it carries some weight. Diagnoses were added to patient records between 30 and 180 days after infection. Look at the incidence of Malaise and fatigue, 23 people per 1000 infected (over the prevailing rate in uninfected people). It's not different between males and females. The difference in rates for white and black people probably reflects a difference in age distributions as well as differences in access to quality care, rather than a biological difference. People with prior mental illness were not more likely to get 'Malaise and fatigue' on their records (22 people per 1000). People with no prior comorbidity had a much lower incidence (12.4 per 1000).

    There is no mention of CFS.

    I assume the big health insurance companies have done hundreds of these types of analyses; they probably know a lot more about the effects of Covid-19 than anyone.
     
    Last edited: Apr 11, 2023
    ahimsa, Sean, Amw66 and 7 others like this.
  5. Hutan

    Hutan Moderator Staff Member

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    I'll just add this, to explain those two codes on the last line of the chart excerpt above.
    U099 - post-COVID-19 condition, unspecified, and
    B948 - sequelae of other infection and parasitic diseases

    These probably overlap with ME/CFS.

    Edit to add - supplementary Table 2 shows which codes they analysed and which they didn't. 'Chronic fatigue- unspecified' is probably included in the Malaise and fatigue group. 'Post-viral fatigue syndrome' was a code included in the analysis but it was either grouped in Malaise and fatigue, or wasn't a common enough diagnosis to rate.
     
    Last edited: Apr 11, 2023
  6. SNT Gatchaman

    SNT Gatchaman Senior Member (Voting Rights)

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    Same team as Data-driven identification of post-acute SARS-CoV-2 infection subphenotypes (2022)

    As with that paper, note one of the authors is Dhruv Khullar who published a very problematic, minimising piece on LC in The New Yorker in 2021. See our comments from this post on. In his prominent article he gave further credence to the ideas of a psychiatry registrar (a trainee).

     
    Art Vandelay, RedFox, bobbler and 4 others like this.
  7. Hutan

    Hutan Moderator Staff Member

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    Screen Shot 2023-04-12 at 8.33.13 am.png

    That chart shows increased drug prescription rates in people infected with
    covid-19 in the 30 to 180 days after the acute infection.

    The top blue section is for neurological drugs - so that is where the anti-depressants would show up if there was a big spike in them. There is some increase (moderate relative to the increase in drugs for lung function, for example, and, really weirdly, witch hazel. What's with that? Is it a New York thing? Maybe the witch hazel rep was offering doctors a big bonus for prescribing it?)

    Figures are adjusted hazard ratios
    quetiapine (1.59) - antipsychotic for schizophrenia, bipolar disorder and major depressive disorder
    melatonin (1.55) - sleep medication
    mirtazapine (1.45) - antidepressant, also used for OCD and anxiety
    lorazepam (1.34) - Ativan - a benzodiazepine, for anxiety, sleep problems, seizures

    witch hazel (2.28) - used topically to soothe skin and eye irritation and itching

    ibuprofen (1.32) - painkiller
     
    alktipping and Peter Trewhitt like this.
  8. alktipping

    alktipping Senior Member (Voting Rights)

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    I think the witch hazel may have something to do with covid toes that seemed to be common enough to make the symptoms list .
     
    Peter Trewhitt, Amw66, RedFox and 2 others like this.
  9. bobbler

    bobbler Senior Member (Voting Rights)

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    Agreed that the skin idea sounds more feasible for witch hazel, when I was a youth we all had a stick of it for spots or any cuts or grazes, stings but works wonders. I can not imagine putting it near the eyes though.

    Only other possibility would be like smelling salts for the loss of smell or if it eased congestion like eucalyptus oil type things (assuming there might be a different formula from the stick)
     
    alktipping, Peter Trewhitt and Amw66 like this.

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