[Preprint] Epstein Barr viral shedding dynamics in saliva during acute SARS-CoV-2 infection, 2026, Garcia-Knight, Hendrich, Peluso+

SNT Gatchaman

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Epstein Barr viral shedding dynamics in saliva during acute SARS-CoV-2 infection
Miguel Antonio Garcia-Knight; Jessica Y Chen; Amethyst Zhang; Michel Tassetto; Scott Lu; Isidro X Perez-Anorve; Sarah A Goldberg; Khamal Anglin; Badri Viswanathan; Steven G Deeks; Timothy Henrich; Jeffrey N Martin; Michael J Peluso; Daniel Kelly; Raul Andino

BACKGROUND
Epstein−Barr virus (EBV) establishes latency in most adults and can be reactivated under conditions of co-infection and immune dysregulation. COVID−19 has been associated with EBV reactivation, primarily in hospitalized cohorts, but EBV shedding in the oral cavity and the extent to which these dynamics trigger a systemic anti−EBV antibody response during acute COVID−19 remain poorly understood.

METHODS
We conducted a nested cohort study of 69 community−based participants including 56 SARS−CoV−2−positive individuals and 13 uninfected household contacts, enrolled as part of a prospective cohort within 5 days of COVID−19 symptom onset. Participants self−collected saliva and nasal samples daily through day 14, then every 3 days until day 21, and once more at day 28. Blood samples were collected on day 28. SARS−CoV−2 RNA in the saliva and nares and EBV DNA in the saliva were quantified by RT−qPCR and qPCR, respectively. EBV antibody responses against viral capsid antigen IgM and IgG, early (D) antigen IgG, and nuclear antigen IgG were quantified in serum by ELISA.

RESULTS
SARS−CoV−2−positive participants tended to be more likely to experience consecutive days of EBV shedding in saliva (p = 0.10) and contributed a higher mean number of EBV DNA−positive specimens compared with uninfected controls (5 vs. 1 per participant; p = 0.018). Among SARS−CoV−2−positive participants with EBV reactivation, a positive correlation was observed between maximum EBV DNA in saliva and SARS-CoV-2 RNA levels in saliva (r = 0.49, p = 0.047) but not with SARS−CoV−2 RNA levels in nasal samples (r = −0.12, p = 0.67). EBV reactivation in saliva was not associated with induction of serological responses to systemic EBV reactivation.

CONCLUSIONS
This cohort study provides evidence that SARS−CoV−2 infection is associated with prolonged salivary EBV shedding, that concurrent high levels of EBV and SARS−CoV−2 in saliva are correlated, but these salivary EBV shedding dynamics do not drive systemic EBV antibody responses. Further research with larger cohorts and mechanistic assays would be helpful to elucidate the biological pathway triggering systemic EBV antibody responses.

Web | DOI | PDF | Preprint: MedRxiv | Open Access
 
Together, these findings are consistent with a model in which SARS-CoV-2–driven mucosal immune perturbations and potentially coinfected cells, facilitate EBV reactivation at epithelial sites which in turn facilites SARS-CoV-2 dissemination, resulting in coordinated increases in both viruses within saliva.

Notably, we did not observe an association between EBV salivary shedding, and the induction of a systemic EBV antibody responses measured on day 28 following SARS-CoV-2 infection. Rather, we found that individuals with no detectable EBV reactivation in saliva had increased EA-D IgG titers in blood compared to those with EBV reactivation, suggestive of a possible protective immune response. This dissociation highlights an important distinction between localized mucosal EBV activity and systemic EBV reactivation and suggests that salivary EBV measurements alone may be insufficient to detect reactivation dynamics at the systemic level.
 
Presumably if Covid inflames your mouth there will be an influx of B cells into the mucosa, where they will immediately die, as B cells do if there are no VCAM-1 + nurse cells around (present in bone marrow or lymph node). That should release EBV into saliva but it would have no other significance.
 
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